PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K02714.2.p
Common NameEUGRSUZ_K02714, LOC104426152
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YC
Protein Properties Length: 235aa    MW: 25491.9 Da    PI: 4.8481
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K02714.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.99.3e-56451491102
             NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                       ql++fw+ q   ie+a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifd
  Eucgr.K02714.2.p  45 QLQMFWSIQrqeIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFD 137
                       89****9888889******************************************************************************** PP

             NF-YC  91 flvdivprdelk 102
                       flvdivprdelk
  Eucgr.K02714.2.p 138 FLVDIVPRDELK 149
                       *********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.51E-3414139IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.7E-3759131IPR009072Histone-fold
PfamPF008088.2E-2167130IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDNAQQQPQP NSYPPPPPPQ AVASGGPGAP PATPFHHLLQ QQQQQLQMFW SIQRQEIEQA  60
NDFKNHQLPL ARIKKIMKAD EDVRMISAEA PVLFAKACEL FILELTIRSW LHAEENKRRT  120
LQKNDIAAAI TRTDIFDFLV DIVPRDELKD EAAGLGAAAA MVGPPASGVP YYYPPMGQPA  180
APGMMIGRPA LDPAGGVYVQ QPPPPSQAWQ SVWQTAAPDD GAYGKPGDLD GPGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C4e-434614519119HapE
4g92_C4e-434614519119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117123RRTLQKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K02714.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-122AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037409.11e-170PREDICTED: nuclear transcription factor Y subunit C-1 isoform X2
SwissprotQ9SMP01e-102NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA0A059A6X61e-170A0A059A6X6_EUCGR; Uncharacterized protein
STRINGPOPTR_0015s10940.11e-110(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.17e-71nuclear factor Y, subunit C1